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| Position | Top player | Team ranking | Top prospect | Organizational ranking | Overall ranking |
|---|---|---|---|---|---|
| Catchers | Charles Johnson | 6th | Brook Fordyce | Tied for 1st | 2nd |
| First Basemen | Craig Shipley | 15th | Tied for 13th | 21st | |
| Second Basemen | Tony Womack | 18th | Tony Womack | 8th | 9th |
| Third Basemen | Robin Ventura | 8th | Edgardo Alfonzo | Tied for 2nd | 3rd |
| Shortstops | Jose Oquendo | 9th | Tied for 16th | 18th | |
| Left Fielders | Tony Gwynn | 13th | Eduardo Perez | Tied for 2nd | 2nd |
| Center Fielders | Lance Blankenship | 6th | Ray McDavid | 12th | 9th |
| Right Fielders | John Cangelosi | 19th | Tied for 10th | 20th | |
| Starting Pitchers | Kevin Appier | 6th | Bryan Rekar | Tied for 12th | 13th |
| Relievers | Tim Crabtree | 8th | Tim Crabtree | 16th | 12th |
| Closers | Bryan Harvey | 4th | Billy Wagner | 14th | 7th |
