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| Position | Top player | Team ranking | Top prospect | Organizational ranking | Overall ranking |
|---|---|---|---|---|---|
| Catchers | Charles Johnson | 7th | Brook Fordyce | 4th | 2nd |
| First Basemen | Craig Shipley | 19th | Tied for 10th | 21st | |
| Second Basemen | Lance Blankenship | 8th | Tied for 12th | 17th | |
| Third Basemen | Craig Counsell | 15th | Freddy F Garcia | 10th | 10th |
| Shortstops | 24th | Tied for 12th | 24th | ||
| Left Fielders | Tony Gwynn | 12th | Rudy Pemberton | Tied for 2nd | 2nd |
| Center Fielders | Dwayne Hosey | 16th | Ray McDavid | 8th | 10th |
| Right Fielders | Tied for 21st | Tied for 10th | Tied for 22nd | ||
| Starting Pitchers | Kevin Appier | 4th | Bryan Rekar | Tied for 7th | 6th |
| Relievers | Tim Crabtree | 5th | Larry Luebbers | 19th | 12th |
| Closers | Bryan Harvey | 1st | Billy Wagner | 13th | 2nd |
